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| LZerD Docking Suite Development Team |
Juan Esquivel-Rodriguez (jesquivel@purdue.edu)
Vianney Filos-Gonzalez (vfilosgo@purdue.edu)
Bin Li (lib@purdue.edu)
Daisuke Kihara * (PI, dkihara@purdue.edu)
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| References |
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- [An application-oriented review of our docking suite is provided here]
Juan Esquivel-Rodriguez, Vianney Filos-Gonzalez, Bin Li, and Daisuke Kihara.
Pairwise and multimeric protein-protein docking using the LZerD program suite.
Protein structure prediction, Methods in Molecular Biology (3rd Edition), D. Kihara (ed.), Springer, in press (2013).
- [If LZerD is used for publication, please cite]
Vishwesh Venkatraman, Yifeng D Yang, Lee Sael, and Daisuke Kihara.
Protein-protein docking using region-based 3D Zernike descriptors.
BMC Bioinformatics 10:407(2009).
[Pubmed]
[PDF]
- [If Multi-LZerD is used for publication, please cite]
Juan Esquivel-Rodriguez, Yifeng D Yang, and Daisuke Kihara.
Multi-LZerD: multiple protein docking for asymmetric complexes.
Proteins: Structure, Function, and Bioinformatics 80(7):1818-33(2012).
[Pubmed]
[PDF]
Juan Esquivel-Rodriguez and Daisuke Kihara.
Evaluation of multiple protein docking structures using correctly predicted pairwise subunits.
BMC Bioinformatics 13 Suppl 2:S6(2012).
[Pubmed]
[PDF]
Juan Esquivel-Rodriguez and Daisuke Kihara.
Effect of conformation sampling strategies in genetic algorithm for multiple protein docking.
BMC Proceedings 6 Suppl 7:S4(2012).
[Pubmed]
[PDF]
- [If PI-LZerD is used for publication, please cite]
Bin Li and Daisuke Kihara.
Protein docking prediction using predicted protein-protein interface.
BMC Bioinformatics 13:7(2012).
[Pubmed]
[PDF]
- [If IDP-LZerD is used for publication, please cite]
Lenna X Peterson, Amitava Roy, Charles Christoffer, Genki Terashi, and Daisuke Kihara.
Modeling disordered protein interactions from biophysical principles.
PLoS Computational Biology 13: e1005485(2017)
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