Supplemental Materials from our Publications

• Supplemental Material of the Domain-PFP.

• Supplemental Material of the Using Steered MD for determining computational protein structure model quality.

• Supplemental Material of the Docking Refinement Benchmark Paper

• Supplemental Material of the VESPER paper

• Trained models for Emap2sec

• PPIP prediction results for Arabidopsis, corn and soybean

• Supplemental Data for NNTox

• Virtual Screening datasets for ten targets from the DUD dataset

• RACalculator: Supplemental Material for A Proteomic Strategy for Global Analysis of Plant Protein Complexes

• Data Set for “Assessment of Protein Side-Chain Conformation Prediction Methods in Different Residue Environments”

• Functional Association Matrix (FAM)

• Interaction Association Score (IAS)

• Supplemental Data for “Evaluation of function predictions by PFP, ESG, and PSI-BLAST for Moonlighting Proteins”

• Datasets for “Genome Scale Identification and Characterization of Moonlighting Proteins”

• Software release for “Genome-scale prediction of moonlighting proteins using diverse protein association information.”

• Datasets for “Application of 3D Zernike descriptors to shape-based ligand similarity searching”

• Supplemental Data for “Functional similarity network with high confidence protein function prediction by PFP”

• Main-chain angle potential and residue-contact potential for threading

• Supplemental Data for VisGrid

• Comparative Study of Small RNA in Complete Genomes

• E.coli Regulatory Motif Dataset

• Amino Acid Similarity Matrices

• Microarray Data Analysis, Protein Function/Structure Prediction & Protein-protein Interaction Databases

• CASP6 Results