[2025-09-25T10:56:32.058624] [QUERYOME] Starting research for query 48: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Are lower fasting plasma glucose levels at diagnosis of type 2 diabetes associated with improved outcomes? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:56:32.131357] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Are lower fasting plasma glucose levels at diagnosis of type 2 diabetes associated with improved outcomes? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:56:32.133736] Saving text to bench_final/run1/pubmedqa/pubmedqa_47/pi_initial_prompt.txt
[2025-09-25T10:56:32.138272] [PI] Calling o3 for initial analysis...
[2025-09-25T10:56:35.469218] [PI] Reasoning iteration 1
[2025-09-25T10:56:35.470845] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:56:35.473368] [PI] Function arguments: {'query': 'lower fasting plasma glucose levels at diagnosis type 2 diabetes associated with improved outcomes mortality complications', 'k': 20, 'faiss_weight': 0.5, 'bm25_weight': 0.5, 'use_rrf': True}
[2025-09-25T10:56:35.475018] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_47/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T10:56:37.630569] [PI] Function hybrid_search executed successfully
[2025-09-25T10:56:37.633803] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_47/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T10:56:37.640823] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:56:43.424109] [PI] Reasoning iteration 2
[2025-09-25T10:56:43.425620] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:56:43.428563] [PI] Function arguments: {'query': 'Lower fasting plasma glucose at diagnosis of type 2 diabetes and outcomes', 'k': 20, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T10:56:43.430174] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_47/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-09-25T10:56:44.874932] [PI] Function hybrid_search executed successfully
[2025-09-25T10:56:44.878161] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_47/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-09-25T10:56:44.889702] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:56:56.355659] [PI] Reasoning iteration 3
[2025-09-25T10:56:56.357987] [PI] No function calls found in response
[2025-09-25T10:56:56.359709] [PI] No more function calls - research complete
[2025-09-25T10:56:56.361565] Saving text to bench_final/run1/pubmedqa/pubmedqa_47/pi_final_answer.txt
[2025-09-25T10:56:56.370198] [QUERYOME] Query completed successfully
