[2025-09-25T13:03:45.638067] [QUERYOME] Starting research for query 412: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
30-Day and 1-year mortality in emergency general surgery laparotomies: an area of concern and need for improvement? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T13:03:45.726373] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
30-Day and 1-year mortality in emergency general surgery laparotomies: an area of concern and need for improvement? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T13:03:45.729013] Saving text to bench_final/run1/pubmedqa/pubmedqa_411/pi_initial_prompt.txt
[2025-09-25T13:03:45.733983] [PI] Calling o3 for initial analysis...
[2025-09-25T13:03:51.542537] [PI] Reasoning iteration 1
[2025-09-25T13:03:51.544175] [PI] Executing function call 1: hybrid_search
[2025-09-25T13:03:51.547084] [PI] Function arguments: {'query': '30-Day and 1-year mortality in emergency general surgery laparotomies', 'k': 5, 'faiss_weight': 0.4, 'bm25_weight': 0.6, 'use_rrf': True}
[2025-09-25T13:03:51.548725] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_411/pi_iteration_1_tool_call_3_hybrid_search.json
[2025-09-25T13:03:53.309161] [PI] Function hybrid_search executed successfully
[2025-09-25T13:03:53.311885] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_411/pi_iteration_1_tool_result_3_hybrid_search.json
[2025-09-25T13:03:53.318453] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T13:04:02.852498] [PI] Reasoning iteration 2
[2025-09-25T13:04:02.854154] [PI] No function calls found in response
[2025-09-25T13:04:02.857099] [PI] No more function calls - research complete
[2025-09-25T13:04:02.858567] Saving text to bench_final/run1/pubmedqa/pubmedqa_411/pi_final_answer.txt
[2025-09-25T13:04:02.865317] [QUERYOME] Query completed successfully
