[2025-09-25T12:38:39.526437] [QUERYOME] Starting research for query 335: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Does the bracket-ligature combination affect the amount of orthodontic space closure over three months? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T12:38:39.608110] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Does the bracket-ligature combination affect the amount of orthodontic space closure over three months? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T12:38:39.612102] Saving text to bench_final/run1/pubmedqa/pubmedqa_334/pi_initial_prompt.txt
[2025-09-25T12:38:39.617858] [PI] Calling o3 for initial analysis...
[2025-09-25T12:38:44.647700] [PI] Reasoning iteration 1
[2025-09-25T12:38:44.649290] [PI] Executing function call 1: hybrid_search
[2025-09-25T12:38:44.651771] [PI] Function arguments: {'query': 'bracket-ligature combination affect amount of orthodontic space closure over three months', 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T12:38:44.653236] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_334/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T12:38:47.953197] [PI] Function hybrid_search executed successfully
[2025-09-25T12:38:47.955421] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_334/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T12:38:47.962965] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T12:38:55.923569] [PI] Reasoning iteration 2
[2025-09-25T12:38:55.926742] [PI] No function calls found in response
[2025-09-25T12:38:55.928262] [PI] No more function calls - research complete
[2025-09-25T12:38:55.931331] Saving text to bench_final/run1/pubmedqa/pubmedqa_334/pi_final_answer.txt
[2025-09-25T12:38:55.951784] [QUERYOME] Query completed successfully
