[2025-09-25T12:35:48.547561] [QUERYOME] Starting research for query 323: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Globulomaxillary cysts--do they really exist? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T12:35:48.621142] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Globulomaxillary cysts--do they really exist? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T12:35:48.622727] Saving text to bench_final/run1/pubmedqa/pubmedqa_322/pi_initial_prompt.txt
[2025-09-25T12:35:48.628236] [PI] Calling o3 for initial analysis...
[2025-09-25T12:35:57.766433] [PI] Reasoning iteration 1
[2025-09-25T12:35:57.768239] [PI reasoning] **Discussing globulomaxillary cysts**

I’m contemplating a question about globulomaxillary cysts and their existence. Historically, they were thought to be fissural cysts between the lateral incisor and canine, but modern research suggests they're actually odontogenic lesions. Many studies indicate that globulomaxillary cysts may not be a distinct entity at all, leading to the likely conclusion that they don’t exist as such—so the answer is probably "no." I might want to check for citations just to be thorough!
[2025-09-25T12:35:57.771310] [PI] Executing function call 1: hybrid_search
[2025-09-25T12:35:57.772889] [PI] Function arguments: {'query': 'Globulomaxillary cysts do they really exist', 'k': 5, 'faiss_weight': 0.5, 'bm25_weight': 0.5, 'use_rrf': True}
[2025-09-25T12:35:57.776136] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_322/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T12:35:58.217317] [PI] Function hybrid_search executed successfully
[2025-09-25T12:35:58.218884] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_322/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T12:35:58.226665] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T12:36:03.415817] [PI] Reasoning iteration 2
[2025-09-25T12:36:03.417170] [PI] No function calls found in response
[2025-09-25T12:36:03.419109] [PI] No more function calls - research complete
[2025-09-25T12:36:03.421612] Saving text to bench_final/run1/pubmedqa/pubmedqa_322/pi_final_answer.txt
[2025-09-25T12:36:03.431641] [QUERYOME] Query completed successfully
