[2025-09-25T10:50:25.740444] [QUERYOME] Starting research for query 32: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Is it Crohn's disease? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:50:25.833239] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Is it Crohn's disease? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:50:25.834983] Saving text to bench_final/run1/pubmedqa/pubmedqa_31/pi_initial_prompt.txt
[2025-09-25T10:50:25.840219] [PI] Calling o3 for initial analysis...
[2025-09-25T10:50:30.871406] [PI] Reasoning iteration 1
[2025-09-25T10:50:30.874042] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:50:30.875646] [PI] Function arguments: {'query': "Is it Crohn's disease? Is it crohns disease?", 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T10:50:30.878952] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T10:50:33.489036] [PI] Function hybrid_search executed successfully
[2025-09-25T10:50:33.491243] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T10:50:33.519058] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:50:38.911643] [PI] Reasoning iteration 2
[2025-09-25T10:50:38.914575] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:50:38.916669] [PI] Function arguments: {'query': '"Is it Crohn\'s disease" PubMed', 'k': 20, 'faiss_weight': 0.3, 'bm25_weight': 0.7, 'use_rrf': True}
[2025-09-25T10:50:38.919654] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-09-25T10:50:43.618248] [PI] Function hybrid_search executed successfully
[2025-09-25T10:50:43.620628] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-09-25T10:50:43.631404] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:50:51.438762] [PI] Reasoning iteration 3
[2025-09-25T10:50:51.440362] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:50:51.442994] [PI] Function arguments: {'query': '"Is it Crohn\'s disease" "abstract"', 'k': 50, 'faiss_weight': 0.25, 'bm25_weight': 0.75, 'use_rrf': True}
[2025-09-25T10:50:51.444669] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_3_tool_call_2_hybrid_search.json
[2025-09-25T10:51:01.925111] [PI] Function hybrid_search executed successfully
[2025-09-25T10:51:01.928844] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_3_tool_result_2_hybrid_search.json
[2025-09-25T10:51:01.945588] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:51:12.093300] [PI] Reasoning iteration 4
[2025-09-25T10:51:12.094593] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:51:12.096216] [PI] Function arguments: {'query': '"Is it" Crohn\'s disease?', 'k': 20, 'faiss_weight': 0.2, 'bm25_weight': 0.8, 'use_rrf': True}
[2025-09-25T10:51:12.099029] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_4_tool_call_2_hybrid_search.json
[2025-09-25T10:51:13.276998] [PI] Function hybrid_search executed successfully
[2025-09-25T10:51:13.280248] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_4_tool_result_2_hybrid_search.json
[2025-09-25T10:51:13.291537] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:51:20.334379] [PI] Reasoning iteration 5
[2025-09-25T10:51:20.335891] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:51:20.338702] [PI] Function arguments: {'query': "colitis is it Crohn's disease?", 'k': 20, 'faiss_weight': 0.3, 'bm25_weight': 0.7, 'use_rrf': True}
[2025-09-25T10:51:20.340254] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_5_tool_call_2_hybrid_search.json
[2025-09-25T10:51:26.385443] [PI] Function hybrid_search executed successfully
[2025-09-25T10:51:26.388281] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_31/pi_iteration_5_tool_result_2_hybrid_search.json
[2025-09-25T10:51:26.399048] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:51:40.816034] [PI] Reasoning iteration 6
[2025-09-25T10:51:40.818585] [PI] No function calls found in response
[2025-09-25T10:51:40.820589] [PI] No more function calls - research complete
[2025-09-25T10:51:40.823561] Saving text to bench_final/run1/pubmedqa/pubmedqa_31/pi_final_answer.txt
[2025-09-25T10:51:40.839402] [QUERYOME] Query completed successfully
