[2025-09-25T11:58:58.799742] [QUERYOME] Starting research for query 216: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Is irritable bowel syndrome a diagnosis of exclusion? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T11:58:58.882718] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Is irritable bowel syndrome a diagnosis of exclusion? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T11:58:58.884576] Saving text to bench_final/run1/pubmedqa/pubmedqa_215/pi_initial_prompt.txt
[2025-09-25T11:58:58.890943] [PI] Calling o3 for initial analysis...
[2025-09-25T11:59:04.844200] [PI] Reasoning iteration 1
[2025-09-25T11:59:04.845819] [PI] Executing function call 1: bm25_mesh_terms_search
[2025-09-25T11:59:04.848171] [PI] Function arguments: {'query': 'irritable bowel syndrome diagnosis of exclusion', 'k': 5}
[2025-09-25T11:59:04.849786] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_1_tool_call_2_bm25_mesh_terms_search.json
[2025-09-25T11:59:05.699574] [PI] Function bm25_mesh_terms_search executed successfully
[2025-09-25T11:59:05.709949] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_1_tool_result_2_bm25_mesh_terms_search.json
[2025-09-25T11:59:05.717897] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T11:59:13.029964] [PI] Reasoning iteration 2
[2025-09-25T11:59:13.033257] [PI] Executing function call 1: hybrid_search
[2025-09-25T11:59:13.034925] [PI] Function arguments: {'query': '"irritable bowel syndrome is no longer a diagnosis of exclusion"', 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T11:59:13.038598] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-09-25T11:59:14.485152] [PI] Function hybrid_search executed successfully
[2025-09-25T11:59:14.487916] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-09-25T11:59:14.593116] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T11:59:21.986241] [PI] Reasoning iteration 3
[2025-09-25T11:59:21.988786] [PI] Executing function call 1: hybrid_search
[2025-09-25T11:59:21.990500] [PI] Function arguments: {'query': 'diagnosing irritable bowel syndrome: a changing clinical paradigm 2011', 'k': 5, 'faiss_weight': 0.5, 'bm25_weight': 0.5, 'use_rrf': True}
[2025-09-25T11:59:21.993428] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_3_tool_call_2_hybrid_search.json
[2025-09-25T11:59:22.870901] [PI] Function hybrid_search executed successfully
[2025-09-25T11:59:22.873582] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_3_tool_result_2_hybrid_search.json
[2025-09-25T11:59:22.879617] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T11:59:27.050066] [PI] Reasoning iteration 4
[2025-09-25T11:59:27.053114] [PI] Executing function call 1: hybrid_search
[2025-09-25T11:59:27.055193] [PI] Function arguments: {'query': 'American College of Gastroenterology guideline irritable bowel syndrome 2021 diagnosis should not be of exclusion', 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T11:59:27.060125] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_4_tool_call_2_hybrid_search.json
[2025-09-25T11:59:28.214052] [PI] Function hybrid_search executed successfully
[2025-09-25T11:59:28.217436] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_215/pi_iteration_4_tool_result_2_hybrid_search.json
[2025-09-25T11:59:28.243778] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T11:59:39.554658] [PI] Reasoning iteration 5
[2025-09-25T11:59:39.557378] [PI] No function calls found in response
[2025-09-25T11:59:39.559124] [PI] No more function calls - research complete
[2025-09-25T11:59:39.560890] Saving text to bench_final/run1/pubmedqa/pubmedqa_215/pi_final_answer.txt
[2025-09-25T11:59:39.565567] [QUERYOME] Query completed successfully
