[2025-09-25T10:39:53.440548] [QUERYOME] Starting research for query 3: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Longer term quality of life and outcome in stroke patients: is the Barthel index alone an adequate measure of outcome? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:39:53.513294] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Longer term quality of life and outcome in stroke patients: is the Barthel index alone an adequate measure of outcome? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:39:53.515208] Saving text to bench_final/run1/pubmedqa/pubmedqa_2/pi_initial_prompt.txt
[2025-09-25T10:39:53.528933] [PI] Calling o3 for initial analysis...
[2025-09-25T10:39:56.211459] [PI] Reasoning iteration 1
[2025-09-25T10:39:56.214308] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:39:56.215995] [PI] Function arguments: {'query': 'Longer term quality of life and outcome in stroke patients: is the Barthel index alone an adequate measure of outcome', 'k': 10, 'faiss_weight': 0.5, 'bm25_weight': 0.5, 'use_rrf': True}
[2025-09-25T10:39:56.218944] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_2/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T10:39:56.851240] [PI] Function hybrid_search executed successfully
[2025-09-25T10:39:56.853979] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_2/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T10:39:56.859619] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:40:01.984804] [PI] Reasoning iteration 2
[2025-09-25T10:40:01.986464] [PI] No function calls found in response
[2025-09-25T10:40:01.989901] [PI] No more function calls - research complete
[2025-09-25T10:40:01.991526] Saving text to bench_final/run1/pubmedqa/pubmedqa_2/pi_final_answer.txt
[2025-09-25T10:40:01.998333] [QUERYOME] Query completed successfully
