[2025-09-25T10:44:23.355808] [QUERYOME] Starting research for query 16: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Risk factors for avascular necrosis of bone in patients with systemic lupus erythematosus: is there a role for antiphospholipid antibodies? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:44:23.429299] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Risk factors for avascular necrosis of bone in patients with systemic lupus erythematosus: is there a role for antiphospholipid antibodies? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T10:44:23.430849] Saving text to bench_final/run1/pubmedqa/pubmedqa_15/pi_initial_prompt.txt
[2025-09-25T10:44:23.436504] [PI] Calling o3 for initial analysis...
[2025-09-25T10:44:39.393277] [PI] Reasoning iteration 1
[2025-09-25T10:44:39.394741] [PI] Executing function call 1: hybrid_search
[2025-09-25T10:44:39.398230] [PI] Function arguments: {'query': 'Risk factors for avascular necrosis of bone in patients with systemic lupus erythematosus: is there a role for antiphospholipid antibodies', 'k': 5, 'faiss_weight': 0.3, 'bm25_weight': 0.7, 'use_rrf': True}
[2025-09-25T10:44:39.399957] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_15/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T10:44:43.451848] [PI] Function hybrid_search executed successfully
[2025-09-25T10:44:43.454632] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_15/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T10:44:43.459969] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T10:44:49.286109] [PI] Reasoning iteration 2
[2025-09-25T10:44:49.289056] [PI] No function calls found in response
[2025-09-25T10:44:49.291066] [PI] No more function calls - research complete
[2025-09-25T10:44:49.294315] Saving text to bench_final/run1/pubmedqa/pubmedqa_15/pi_final_answer.txt
[2025-09-25T10:44:49.299704] [QUERYOME] Query completed successfully
