[2025-09-25T11:23:06.515974] [QUERYOME] Starting research for query 121: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Is a patient's self-reported health-related quality of life a prognostic factor for survival in non-small-cell lung cancer patients? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T11:23:06.589287] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Is a patient's self-reported health-related quality of life a prognostic factor for survival in non-small-cell lung cancer patients? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T11:23:06.590907] Saving text to bench_final/run1/pubmedqa/pubmedqa_120/pi_initial_prompt.txt
[2025-09-25T11:23:06.596163] [PI] Calling o3 for initial analysis...
[2025-09-25T11:23:09.964862] [PI] Reasoning iteration 1
[2025-09-25T11:23:09.966491] [PI] Executing function call 1: hybrid_search
[2025-09-25T11:23:09.968772] [PI] Function arguments: {'query': "patient's self-reported health-related quality of life prognostic factor survival non-small-cell lung cancer patients", 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T11:23:09.970336] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_120/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T11:23:12.924889] [PI] Function hybrid_search executed successfully
[2025-09-25T11:23:12.928308] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_120/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T11:23:12.936491] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T11:23:20.593378] [PI] Reasoning iteration 2
[2025-09-25T11:23:20.594982] [PI] No function calls found in response
[2025-09-25T11:23:20.596603] [PI] No more function calls - research complete
[2025-09-25T11:23:20.599043] Saving text to bench_final/run1/pubmedqa/pubmedqa_120/pi_final_answer.txt
[2025-09-25T11:23:20.611085] [QUERYOME] Query completed successfully
