[2025-09-25T11:19:51.948464] [QUERYOME] Starting research for query 112: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Preoperative tracheobronchoscopy in newborns with esophageal atresia: does it matter? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T11:19:52.034465] [PI] Starting research for query: 'Instructions: 
 Answer the question below. Please respond with the option letter (A, B, or C) first. (HINT: Each PubMedQA instance is composed of (1) a question which is either an existing research article title or derived from one, (2) a context which is the corresponding abstract without its conclusion, (3) a long answer, which is the conclusion of the abstract and, presumably, answers the research question, and (4) a yes/no/maybe answer which summarizes the conclusion.) 

Question:
Preoperative tracheobronchoscopy in newborns with esophageal atresia: does it matter? 

Options:
{'A': 'yes', 'B': 'no', 'C': 'maybe'}'
[2025-09-25T11:19:52.036029] Saving text to bench_final/run1/pubmedqa/pubmedqa_111/pi_initial_prompt.txt
[2025-09-25T11:19:52.041018] [PI] Calling o3 for initial analysis...
[2025-09-25T11:19:57.244851] [PI] Reasoning iteration 1
[2025-09-25T11:19:57.246337] [PI] Executing function call 1: hybrid_search
[2025-09-25T11:19:57.248982] [PI] Function arguments: {'query': 'Preoperative tracheobronchoscopy in newborns with esophageal atresia does it matter', 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T11:19:57.250997] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_111/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-25T11:20:00.448948] [PI] Function hybrid_search executed successfully
[2025-09-25T11:20:00.451046] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_111/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-25T11:20:00.474627] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T11:20:08.201239] [PI] Reasoning iteration 2
[2025-09-25T11:20:08.212031] [PI] Executing function call 1: hybrid_search
[2025-09-25T11:20:08.215741] [PI] Function arguments: {'query': '16769333 abstract', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-09-25T11:20:08.218509] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_111/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-09-25T11:20:09.614085] [PI] Function hybrid_search executed successfully
[2025-09-25T11:20:09.615669] Saving JSON to bench_final/run1/pubmedqa/pubmedqa_111/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-09-25T11:20:09.641762] [PI] Continuing reasoning with 1 function responses...
[2025-09-25T11:20:17.693270] [PI] Reasoning iteration 3
[2025-09-25T11:20:17.694857] [PI] No function calls found in response
[2025-09-25T11:20:17.696927] [PI] No more function calls - research complete
[2025-09-25T11:20:17.699363] Saving text to bench_final/run1/pubmedqa/pubmedqa_111/pi_final_answer.txt
[2025-09-25T11:20:17.713429] [QUERYOME] Query completed successfully
