[2025-09-30T01:07:15.328332] [QUERYOME] Starting research for query 378: 'Instructions: 
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer. 

Question:
All are features of reversible cell injury EXCEPT 

Options:
{'A': 'ER swelling', 'B': 'Dens deposition of mitochondria', 'C': 'Bleb', 'D': 'Detachment of ribosome'}'
[2025-09-30T01:07:15.425554] [PI] Starting research for query: 'Instructions: 
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer. 

Question:
All are features of reversible cell injury EXCEPT 

Options:
{'A': 'ER swelling', 'B': 'Dens deposition of mitochondria', 'C': 'Bleb', 'D': 'Detachment of ribosome'}'
[2025-09-30T01:07:15.426959] Saving text to bench_final/run1/medmcqa/medmcqa_377/pi_initial_prompt.txt
[2025-09-30T01:07:15.449601] [PI] Calling o3 for initial analysis...
[2025-09-30T01:07:21.646029] [PI] Reasoning iteration 1
[2025-09-30T01:07:21.647636] [PI] Executing function call 1: hybrid_search
[2025-09-30T01:07:21.649772] [PI] Function arguments: {'query': 'mitochondrial amorphous densities irreversible cell injury', 'k': 5, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-09-30T01:07:21.651328] Saving JSON to bench_final/run1/medmcqa/medmcqa_377/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-09-30T01:08:00.383399] [PI] Function hybrid_search executed successfully
[2025-09-30T01:08:00.385027] Saving JSON to bench_final/run1/medmcqa/medmcqa_377/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-09-30T01:08:00.390735] [PI] Continuing reasoning with 1 function responses...
[2025-09-30T01:08:09.293119] [PI] Reasoning iteration 2
[2025-09-30T01:08:09.294846] [PI] No function calls found in response
[2025-09-30T01:08:09.296454] [PI] No more function calls - research complete
[2025-09-30T01:08:09.297711] Saving text to bench_final/run1/medmcqa/medmcqa_377/pi_final_answer.txt
[2025-09-30T01:08:09.313427] [QUERYOME] Query completed successfully
