[2025-10-02T05:11:20.581552] [QUERYOME] Starting research for query 1945: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
Beta 1,3 Glucan test is positive in all except?

Options:
A. Aspergillus
B. Candida
C. Mucormycosis
D. Pneumocystis Jirovecii'
[2025-10-02T05:11:20.625904] [PI] Starting research for query: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
Beta 1,3 Glucan test is positive in all except?

Options:
A. Aspergillus
B. Candida
C. Mucormycosis
D. Pneumocystis Jirovecii'
[2025-10-02T05:11:20.627962] Saving text to bench_final/run1/medmcqa/medmcqa_3505/pi_initial_prompt.txt
[2025-10-02T05:11:20.633388] [PI] Calling o3 for initial analysis...
[2025-10-02T05:11:26.787885] [PI] Reasoning iteration 1
[2025-10-02T05:11:26.791173] [PI] Executing function call 1: hybrid_search
[2025-10-02T05:11:26.792767] [PI] Function arguments: {'query': 'mucormycosis beta-D glucan negative', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-02T05:11:26.796004] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-02T05:11:28.067361] [PI] Function hybrid_search executed successfully
[2025-10-02T05:11:28.070367] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-02T05:11:28.076508] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T05:11:31.654222] [PI] Reasoning iteration 2
[2025-10-02T05:11:31.656746] [PI] Executing function call 1: hybrid_search
[2025-10-02T05:11:31.660579] [PI] Function arguments: {'query': '(1→3)-β-D-glucan pneumocystis diagnosis positive', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-02T05:11:31.662288] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-10-02T05:11:32.532142] [PI] Function hybrid_search executed successfully
[2025-10-02T05:11:32.533784] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-10-02T05:11:32.538678] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T05:11:37.211766] [PI] Reasoning iteration 3
[2025-10-02T05:11:37.213536] [PI] Executing function call 1: hybrid_search
[2025-10-02T05:11:37.216813] [PI] Function arguments: {'query': 'mucorales beta-d-glucan assay negative', 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-02T05:11:37.218533] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_3_tool_call_2_hybrid_search.json
[2025-10-02T05:11:39.434016] [PI] Function hybrid_search executed successfully
[2025-10-02T05:11:39.437185] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_3_tool_result_2_hybrid_search.json
[2025-10-02T05:11:39.461330] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T05:11:43.647651] [PI] Reasoning iteration 4
[2025-10-02T05:11:43.650405] [PI] Executing function call 1: hybrid_search
[2025-10-02T05:11:43.652479] [PI] Function arguments: {'query': 'Mucorales lack beta-glucan cell wall 1,3', 'k': 10, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-10-02T05:11:43.654289] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_4_tool_call_2_hybrid_search.json
[2025-10-02T05:11:45.757873] [PI] Function hybrid_search executed successfully
[2025-10-02T05:11:45.760331] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_4_tool_result_2_hybrid_search.json
[2025-10-02T05:11:45.767078] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T05:11:52.248817] [PI] Reasoning iteration 5
[2025-10-02T05:11:52.251399] [PI] Executing function call 1: hybrid_search
[2025-10-02T05:11:52.253795] [PI] Function arguments: {'query': 'beta-d glucan mucormycosis negative result', 'k': 10, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-02T05:11:52.256654] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_5_tool_call_2_hybrid_search.json
[2025-10-02T05:11:52.856571] [PI] Function hybrid_search executed successfully
[2025-10-02T05:11:52.858209] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_5_tool_result_2_hybrid_search.json
[2025-10-02T05:11:52.865804] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T05:12:02.310837] [PI] Reasoning iteration 6
[2025-10-02T05:12:02.312367] [PI] Executing function call 1: hybrid_search
[2025-10-02T05:12:02.315566] [PI] Function arguments: {'query': 'beta-D glucan candidemia diagnostic', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-02T05:12:02.317358] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_6_tool_call_2_hybrid_search.json
[2025-10-02T05:12:03.207657] [PI] Function hybrid_search executed successfully
[2025-10-02T05:12:03.211247] Saving JSON to bench_final/run1/medmcqa/medmcqa_3505/pi_iteration_6_tool_result_2_hybrid_search.json
[2025-10-02T05:12:03.217796] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T05:12:24.733866] [PI] Reasoning iteration 7
[2025-10-02T05:12:24.736582] [PI] No function calls found in response
[2025-10-02T05:12:24.738871] [PI] No more function calls - research complete
[2025-10-02T05:12:24.741683] Saving text to bench_final/run1/medmcqa/medmcqa_3505/pi_final_answer.txt
[2025-10-02T05:12:24.746871] [QUERYOME] Query completed successfully
