[2025-10-02T01:36:17.325374] [QUERYOME] Starting research for query 1464: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
Intra nuclear inclusions detected during the course of
herpes simplex virus infection are ratted

Options:
A. Bacteriophages
B. Lipschutz bodies
C. Negri bodies
D. Donavan bodies'
[2025-10-02T01:36:17.411982] [PI] Starting research for query: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
Intra nuclear inclusions detected during the course of
herpes simplex virus infection are ratted

Options:
A. Bacteriophages
B. Lipschutz bodies
C. Negri bodies
D. Donavan bodies'
[2025-10-02T01:36:17.413519] Saving text to bench_final/run1/medmcqa/medmcqa_3024/pi_initial_prompt.txt
[2025-10-02T01:36:17.417639] [PI] Calling o3 for initial analysis...
[2025-10-02T01:36:20.594922] [PI] Reasoning iteration 1
[2025-10-02T01:36:20.596728] [PI] Executing function call 1: hybrid_search
[2025-10-02T01:36:20.598431] [PI] Function arguments: {'query': 'herpes simplex intranuclear inclusion bodies Lipschutz bodies cowdry type A', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-02T01:36:20.605169] Saving JSON to bench_final/run1/medmcqa/medmcqa_3024/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-02T01:36:21.349697] [PI] Function hybrid_search executed successfully
[2025-10-02T01:36:21.351066] Saving JSON to bench_final/run1/medmcqa/medmcqa_3024/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-02T01:36:21.356612] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T01:36:25.940683] [PI] Reasoning iteration 2
[2025-10-02T01:36:25.942203] [PI] Executing function call 1: hybrid_search
[2025-10-02T01:36:25.943898] [PI] Function arguments: {'query': 'Lipschutz bodies herpes simplex intranuclear inclusion', 'k': 10, 'faiss_weight': 0.4, 'bm25_weight': 0.6, 'use_rrf': True}
[2025-10-02T01:36:25.945743] Saving JSON to bench_final/run1/medmcqa/medmcqa_3024/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-10-02T01:36:26.781219] [PI] Function hybrid_search executed successfully
[2025-10-02T01:36:26.782970] Saving JSON to bench_final/run1/medmcqa/medmcqa_3024/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-10-02T01:36:26.799160] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T01:36:32.639089] [PI] Reasoning iteration 3
[2025-10-02T01:36:32.641317] [PI] No function calls found in response
[2025-10-02T01:36:32.642904] [PI] No more function calls - research complete
[2025-10-02T01:36:32.645052] Saving text to bench_final/run1/medmcqa/medmcqa_3024/pi_final_answer.txt
[2025-10-02T01:36:32.649009] [QUERYOME] Query completed successfully
