[2025-10-02T00:31:41.592895] [QUERYOME] Starting research for query 1313: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
Enzyme that catalyses the transfer of a molecule group from one molecule to another is:

Options:
A. Oxidases
B. Oxidases
C. Transferases
D. Lipases'
[2025-10-02T00:31:41.635722] [PI] Starting research for query: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
Enzyme that catalyses the transfer of a molecule group from one molecule to another is:

Options:
A. Oxidases
B. Oxidases
C. Transferases
D. Lipases'
[2025-10-02T00:31:41.637234] Saving text to bench_final/run1/medmcqa/medmcqa_2873/pi_initial_prompt.txt
[2025-10-02T00:31:41.658982] [PI] Calling o3 for initial analysis...
[2025-10-02T00:31:48.525347] [PI] Reasoning iteration 1
[2025-10-02T00:31:48.526892] [PI] Executing function call 1: hybrid_search
[2025-10-02T00:31:48.528261] [PI] Function arguments: {'query': 'transferase enzyme catalyzes transfer of a group from one molecule to another', 'k': 5, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-10-02T00:31:48.530344] Saving JSON to bench_final/run1/medmcqa/medmcqa_2873/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-02T00:31:49.156333] [PI] Function hybrid_search executed successfully
[2025-10-02T00:31:49.157938] Saving JSON to bench_final/run1/medmcqa/medmcqa_2873/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-02T00:31:49.162303] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T00:31:53.146867] [PI] Reasoning iteration 2
[2025-10-02T00:31:53.148319] [PI] Executing function call 1: hybrid_search
[2025-10-02T00:31:53.150217] [PI] Function arguments: {'query': 'Transferases catalyze transfer of a functional group from one molecule to another', 'k': 5, 'faiss_weight': 0.5, 'bm25_weight': 0.5, 'use_rrf': True}
[2025-10-02T00:31:53.152037] Saving JSON to bench_final/run1/medmcqa/medmcqa_2873/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-10-02T00:31:53.537388] [PI] Function hybrid_search executed successfully
[2025-10-02T00:31:53.538898] Saving JSON to bench_final/run1/medmcqa/medmcqa_2873/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-10-02T00:31:53.543929] [PI] Continuing reasoning with 1 function responses...
[2025-10-02T00:31:58.798683] [PI] Reasoning iteration 3
[2025-10-02T00:31:58.805295] [PI] No function calls found in response
[2025-10-02T00:31:58.807200] [PI] No more function calls - research complete
[2025-10-02T00:31:58.808774] Saving text to bench_final/run1/medmcqa/medmcqa_2873/pi_final_answer.txt
[2025-10-02T00:31:58.821610] [QUERYOME] Query completed successfully
