[2025-10-01T23:16:08.952246] [QUERYOME] Starting research for query 1147: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
During pregnancy baby can be affected in utero in all except:

Options:
A. Candida
B. Syphilis
C. Toxoplasmosis
D. Polio'
[2025-10-01T23:16:08.992451] [PI] Starting research for query: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
During pregnancy baby can be affected in utero in all except:

Options:
A. Candida
B. Syphilis
C. Toxoplasmosis
D. Polio'
[2025-10-01T23:16:08.993945] Saving text to bench_final/run1/medmcqa/medmcqa_2707/pi_initial_prompt.txt
[2025-10-01T23:16:08.998101] [PI] Calling o3 for initial analysis...
[2025-10-01T23:16:23.645457] [PI] Reasoning iteration 1
[2025-10-01T23:16:23.647057] [PI reasoning] **Identifying infections affecting the fetus**

The user has a multiple-choice question about infections that can affect a fetus in utero. We're considering Candida, Syphilis, Toxoplasmosis, and Polio to determine which one doesn't impact the fetus. Congenital infections include parts of the TORCH complex, and typically, Polio does not cross the placenta. While Candida can ascend and may impact the fetus, it's rare. Both Syphilis and Toxoplasmosis do affect the fetus. So, I'm confident that Polio is the correct answer and will double-check that.
[2025-10-01T23:16:23.648750] [PI] Executing function call 1: hybrid_search
[2025-10-01T23:16:23.650440] [PI] Function arguments: {'query': 'polio vertical transmission placenta fetus in utero congenital poliomyelitis', 'k': 10, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-10-01T23:16:23.652025] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-01T23:16:25.376452] [PI] Function hybrid_search executed successfully
[2025-10-01T23:16:25.378946] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-01T23:16:25.417031] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T23:16:29.642982] [PI] Reasoning iteration 2
[2025-10-01T23:16:29.644797] [PI] Executing function call 1: hybrid_search
[2025-10-01T23:16:29.646793] [PI] Function arguments: {'query': 'congenital candidiasis intrauterine infection candida fetus in utero', 'k': 10, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-10-01T23:16:29.648655] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_2_tool_call_2_hybrid_search.json
[2025-10-01T23:16:31.142699] [PI] Function hybrid_search executed successfully
[2025-10-01T23:16:31.144444] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_2_tool_result_2_hybrid_search.json
[2025-10-01T23:16:31.150876] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T23:16:34.342427] [PI] Reasoning iteration 3
[2025-10-01T23:16:34.343925] [PI] Executing function call 1: hybrid_search
[2025-10-01T23:16:34.346391] [PI] Function arguments: {'query': 'congenital poliomyelitis in utero infection polio fetus transplacental', 'k': 10, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-10-01T23:16:34.347947] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_3_tool_call_2_hybrid_search.json
[2025-10-01T23:16:35.876089] [PI] Function hybrid_search executed successfully
[2025-10-01T23:16:35.878696] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_3_tool_result_2_hybrid_search.json
[2025-10-01T23:16:35.886148] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T23:16:39.377650] [PI] Reasoning iteration 4
[2025-10-01T23:16:39.379443] [PI] Executing function call 1: hybrid_search
[2025-10-01T23:16:39.382268] [PI] Function arguments: {'query': 'syphilis transplacental transmission fetus congenital syphilis', 'k': 5, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-10-01T23:16:39.383823] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_4_tool_call_2_hybrid_search.json
[2025-10-01T23:16:40.056378] [PI] Function hybrid_search executed successfully
[2025-10-01T23:16:40.058200] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_4_tool_result_2_hybrid_search.json
[2025-10-01T23:16:40.076516] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T23:16:42.870927] [PI] Reasoning iteration 5
[2025-10-01T23:16:42.872490] [PI] Executing function call 1: hybrid_search
[2025-10-01T23:16:42.874194] [PI] Function arguments: {'query': 'congenital toxoplasmosis transplacental infection', 'k': 5, 'faiss_weight': 0.7, 'bm25_weight': 0.3, 'use_rrf': True}
[2025-10-01T23:16:42.876143] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_5_tool_call_2_hybrid_search.json
[2025-10-01T23:16:43.840413] [PI] Function hybrid_search executed successfully
[2025-10-01T23:16:43.842261] Saving JSON to bench_final/run1/medmcqa/medmcqa_2707/pi_iteration_5_tool_result_2_hybrid_search.json
[2025-10-01T23:16:43.859227] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T23:16:51.576244] [PI] Reasoning iteration 6
[2025-10-01T23:16:51.577866] [PI] No function calls found in response
[2025-10-01T23:16:51.581721] [PI] No more function calls - research complete
[2025-10-01T23:16:51.583943] Saving text to bench_final/run1/medmcqa/medmcqa_2707/pi_final_answer.txt
[2025-10-01T23:16:51.588457] [QUERYOME] Query completed successfully
