[2025-10-01T19:22:46.317304] [QUERYOME] Starting research for query 600: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
What high energy phosphate compound is formed in the citric acid cycle through substrate level phosphorylation:

Options:
A. ATP
B. TTP
C. ITP
D. GTP'
[2025-10-01T19:22:46.356555] [PI] Starting research for query: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
What high energy phosphate compound is formed in the citric acid cycle through substrate level phosphorylation:

Options:
A. ATP
B. TTP
C. ITP
D. GTP'
[2025-10-01T19:22:46.358219] Saving text to bench_final/run1/medmcqa/medmcqa_2160/pi_initial_prompt.txt
[2025-10-01T19:22:46.382828] [PI] Calling o3 for initial analysis...
[2025-10-01T19:22:49.478499] [PI] Reasoning iteration 1
[2025-10-01T19:22:49.480135] [PI] Executing function call 1: hybrid_search
[2025-10-01T19:22:49.482956] [PI] Function arguments: {'query': 'succinyl-CoA synthetase substrate level phosphorylation GTP citrate cycle GTP formation', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-01T19:22:49.484647] Saving JSON to bench_final/run1/medmcqa/medmcqa_2160/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-01T19:22:50.973299] [PI] Function hybrid_search executed successfully
[2025-10-01T19:22:50.974865] Saving JSON to bench_final/run1/medmcqa/medmcqa_2160/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-01T19:22:50.981939] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T19:22:59.253754] [PI] Reasoning iteration 2
[2025-10-01T19:22:59.256509] [PI] No function calls found in response
[2025-10-01T19:22:59.258403] [PI] No more function calls - research complete
[2025-10-01T19:22:59.261938] Saving text to bench_final/run1/medmcqa/medmcqa_2160/pi_final_answer.txt
[2025-10-01T19:22:59.267160] [QUERYOME] Query completed successfully
