[2025-10-01T15:28:16.034205] [QUERYOME] Starting research for query 94: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
The cell junctions allowing exchange of cytoplasmic molecules between two cells are called:

Options:
A. Gap junctions
B. Tight junctions
C. Anchoring junctions
D. Focal junctions'
[2025-10-01T15:28:16.108414] [PI] Starting research for query: 'Instructions:
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer.

Question:
The cell junctions allowing exchange of cytoplasmic molecules between two cells are called:

Options:
A. Gap junctions
B. Tight junctions
C. Anchoring junctions
D. Focal junctions'
[2025-10-01T15:28:16.111736] Saving text to bench_final/run1/medmcqa/medmcqa_1654/pi_initial_prompt.txt
[2025-10-01T15:28:16.116098] [PI] Calling o3 for initial analysis...
[2025-10-01T15:28:19.688718] [PI] Reasoning iteration 1
[2025-10-01T15:28:19.691591] [PI] Executing function call 1: hybrid_search
[2025-10-01T15:28:19.693218] [PI] Function arguments: {'query': 'gap junctions exchange of cytoplasmic molecules between cells', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-01T15:28:19.694872] Saving JSON to bench_final/run1/medmcqa/medmcqa_1654/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-01T15:28:20.459437] [PI] Function hybrid_search executed successfully
[2025-10-01T15:28:20.462559] Saving JSON to bench_final/run1/medmcqa/medmcqa_1654/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-01T15:28:20.468036] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T15:28:25.952921] [PI] Reasoning iteration 2
[2025-10-01T15:28:25.954531] [PI] No function calls found in response
[2025-10-01T15:28:25.957398] [PI] No more function calls - research complete
[2025-10-01T15:28:25.959207] Saving text to bench_final/run1/medmcqa/medmcqa_1654/pi_final_answer.txt
[2025-10-01T15:28:25.964329] [QUERYOME] Query completed successfully
