[2025-10-01T07:33:52.230061] [QUERYOME] Starting research for query 1300: 'Instructions: 
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer. 

Question:
Percentage of SSI rate in patients with a clean contaminated wound? 

Options:
{'A': '1-2%', 'B': '<10%', 'C': '10- 20 %', 'D': '20- 30 %'}'
[2025-10-01T07:33:52.290725] [PI] Starting research for query: 'Instructions: 
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer. 

Question:
Percentage of SSI rate in patients with a clean contaminated wound? 

Options:
{'A': '1-2%', 'B': '<10%', 'C': '10- 20 %', 'D': '20- 30 %'}'
[2025-10-01T07:33:52.292677] Saving text to bench_final/run1/medmcqa/medmcqa_1299/pi_initial_prompt.txt
[2025-10-01T07:33:52.302267] [PI] Calling o3 for initial analysis...
[2025-10-01T07:34:00.867777] [PI] Reasoning iteration 1
[2025-10-01T07:34:00.871029] [PI reasoning] **Determining SSI rates for wounds**

I'm figuring out the SSI rates in patients with clean contaminated wounds. Generally, for Class II wounds, the rates range from about 3-11%, but some sources suggest it's closer to 5-15%. Examining the answer choices, I'll rule out A (1-2%) as too low. B (<10%) makes sense given typical infection rates, while C (10-20%) seems too high. I think the best fit is B. I'll look for supportive evidence from guidelines or textbooks to back this up.
[2025-10-01T07:34:00.872899] [PI] Executing function call 1: hybrid_search
[2025-10-01T07:34:00.875952] [PI] Function arguments: {'query': 'surgical site infection rate clean contaminated wound percentage', 'k': 10, 'faiss_weight': 0.5, 'bm25_weight': 0.5, 'use_rrf': True}
[2025-10-01T07:34:00.877570] Saving JSON to bench_final/run1/medmcqa/medmcqa_1299/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-01T07:34:31.275625] [PI] Function hybrid_search executed successfully
[2025-10-01T07:34:31.277567] Saving JSON to bench_final/run1/medmcqa/medmcqa_1299/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-01T07:34:31.286485] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T07:34:38.975986] [PI] Reasoning iteration 2
[2025-10-01T07:34:38.977367] [PI] No function calls found in response
[2025-10-01T07:34:38.980132] [PI] No more function calls - research complete
[2025-10-01T07:34:38.981784] Saving text to bench_final/run1/medmcqa/medmcqa_1299/pi_final_answer.txt
[2025-10-01T07:34:39.015099] [QUERYOME] Query completed successfully
