[2025-10-01T05:15:31.476559] [QUERYOME] Starting research for query 1201: 'Instructions: 
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer. 

Question:
A neonate is being investigated for jaundice. A liver biopsy shows features of a "Giant Cell/Neonatal hepatitis". Which one of the following conditions usually results in this case – 

Options:
{'A': 'Congenital hepatic fibrosis', 'B': 'Hemochromatosis', 'C': 'Alpha–1–antitrypsin deficiency', 'D': 'Glycogen storage disease Type 1'}'
[2025-10-01T05:15:31.525635] [PI] Starting research for query: 'Instructions: 
 Answer the question below. First, respond with the single best option letter (A, B, C, or D). Then provide a concise reasoning (1–3 sentences). Use both the retrieved evidence and your own medical knowledge to choose the most accurate answer. 

Question:
A neonate is being investigated for jaundice. A liver biopsy shows features of a "Giant Cell/Neonatal hepatitis". Which one of the following conditions usually results in this case – 

Options:
{'A': 'Congenital hepatic fibrosis', 'B': 'Hemochromatosis', 'C': 'Alpha–1–antitrypsin deficiency', 'D': 'Glycogen storage disease Type 1'}'
[2025-10-01T05:15:31.528320] Saving text to bench_final/run1/medmcqa/medmcqa_1200/pi_initial_prompt.txt
[2025-10-01T05:15:31.535079] [PI] Calling o3 for initial analysis...
[2025-10-01T05:15:37.058004] [PI] Reasoning iteration 1
[2025-10-01T05:15:37.059837] [PI] Executing function call 1: hybrid_search
[2025-10-01T05:15:37.067698] [PI] Function arguments: {'query': 'alpha-1 antitrypsin deficiency neonatal hepatitis giant cell transformation hepatocytes', 'k': 5, 'faiss_weight': 0.6, 'bm25_weight': 0.4, 'use_rrf': True}
[2025-10-01T05:15:37.069272] Saving JSON to bench_final/run1/medmcqa/medmcqa_1200/pi_iteration_1_tool_call_2_hybrid_search.json
[2025-10-01T05:16:10.050469] [PI] Function hybrid_search executed successfully
[2025-10-01T05:16:10.053314] Saving JSON to bench_final/run1/medmcqa/medmcqa_1200/pi_iteration_1_tool_result_2_hybrid_search.json
[2025-10-01T05:16:10.062856] [PI] Continuing reasoning with 1 function responses...
[2025-10-01T05:16:14.561569] [PI] Reasoning iteration 2
[2025-10-01T05:16:14.564275] [PI] No function calls found in response
[2025-10-01T05:16:14.566029] [PI] No more function calls - research complete
[2025-10-01T05:16:14.568715] Saving text to bench_final/run1/medmcqa/medmcqa_1200/pi_final_answer.txt
[2025-10-01T05:16:14.591477] [QUERYOME] Query completed successfully
