FlexPred: Protein fluctuation prediction using SVR

FlexPred takes a protein structure in PDB format as input, and predict the fluctuation of each residue (Cα atom) by considering Cα atoms contact number with set of cutoffs (16, 15, 18, 12, 8, 6, 20, 22 [Å]) of the protein with the Support Vector Regression. As an output program create CSV file with data and fluctuation plot.

For details, please read our paper M Jamroz, A Kolinski & D Kihara "Structural features of proteins that predict real-value fluctuation of globular proteins"

Select PDB model
select models with backbone atoms.

* - "with B-factor" utilizes B-factor (feature set 15, Table II), "without B-factor" utilizes only contact numbers (feature set 16, Table II).
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Download software Please read README file before use. download file