Supplemental Material for
A Proteomic Strategy for Global Analysis of Plant Protein Complexes

Uma K Aryal,^a Yi Xiong,^b,1 Zachary McBride,^b Daisuke Kihara,^b,c Jun Xie,^d Mark C. Hall,^a and Daniel B. Szymanski,^b,e,2

^a Department of Biochemistry, Purdue University, West Lafayette, IN 47907
^b Department of Biological Sciences, Purdue University, West Lafayette, IN 47907
^c Department of Computer Science, Purdue University, West Lafayette, IN, 47907
^d Department of Statistics, Purdue University, West Lafayette, IN, 47907
^e Department of Agronomy, Purdue University, West Lafayette, IN 47907

¹ Present address: Department of Bioinformatics and Biostatistics, Shanghai Jiaotong University, Shanghai 200240, China
² Corresponding author: Daniel B. Szymanski, Tel: (765) 494-8092, Fax: (765) 496-4763, E-mail: dszyman@purdue.edu

Plant Cell in press (2014)

Program for computing:

1. Spectral counts of unique peptides
2. Spectral counts of shared peptides
3. Adjusted spectral counts of peptides
4. Normalized adjusted spectral counts
5. NASF values after scaling

Originally written by Yi Xiong
Development continued by Qing Xu

Download (README.txt, example files included)