Supplementary Materials for

“Effect of Using Suboptimal Alignments in Template-Based Protein Structure Prediction”  by Hao Chen and Daisuke Kihara , Submitted (2010)


1. SAli-ST (single alignment – Single template) models, MAli-ST (multiple alignments-single template) models,  SAli-MT (single alignment – multiple templates) models, , MAli-MT (multiple alignments-multiple templates) models for the casp7 targets. Link.

2. The main-chain angle potential. Link.

3.  The amino acid residue contact potential. Link.

4. The executable files of the SUPRB threading program and user manuals. Link.


Hao Chen ( or Daisuke Kihara (
Dept. of Biological Sciences
Purdue University, West Lafayette, IN, 47907, USA