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  1. [An application-oriented review of our docking suite is provided here] 
    Juan Esquivel-Rodriguez, Vianney Filos-Gonzalez, Bin Li, and Daisuke Kihara. Pairwise and multimeric protein-protein docking using the LZerD program suite. Protein structure prediction, Methods in Molecular Biology (3rd Edition), D. Kihara (ed.), Springer, in press (2013).

  2. [If LZerD is used for publication, please cite] 
    Vishwesh Venkatraman, Yifeng D Yang, Lee Sael, and Daisuke Kihara. Protein-protein docking using region-based 3D Zernike descriptors. BMC Bioinformatics 10:407(2009). [Pubmed] [PDF]

  3. [If Multi-LZerD is used for publication, please cite] 
    Juan Esquivel-Rodriguez, Yifeng D Yang, and Daisuke Kihara.  Multi-LZerD: multiple protein docking for asymmetric complexes. Proteins: Structure, Function, and Bioinformatics 80(7):1818-33(2012). [Pubmed] [PDF]

    Juan Esquivel-Rodriguez and Daisuke Kihara. Evaluation of multiple protein docking structures using correctly predicted pairwise subunits. BMC Bioinformatics 13 Suppl 2:S6(2012). [Pubmed] [PDF]

    Juan Esquivel-Rodriguez and Daisuke Kihara. Effect of conformation sampling strategies in genetic algorithm for multiple protein docking. BMC Proceedings 6 Suppl 7:S4(2012). [Pubmed] [PDF]

  4. [If PI-LZerD is used for publication, please cite] 
    Bin Li and Daisuke Kihara. Protein docking prediction using predicted protein-protein interface. BMC Bioinformatics 13:7(2012). [Pubmed] [PDF]



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