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Source Code

All source codes and binary files are available from here

The latest version of CImg.h is available from CImg Library You can download the source code, binary file and demo outputs of fasta2asc and genPortrait.

fasta2asc reads the genome sequence and counts the frequences of n-length nucleotides, then saves the frequencies in a text file.

• fasta2asc -9 e.coli.fna => e.coli.fna.9.asc (Frequencies of 9-nucleotides)
• fasta2asc -5 e.coli.fna => e.coli.fna.5.asc (Frequencies of 5-nucleotides)

genPortrait reads the text format file and maps the frequencies into a gray scale or maps into a color scale. The color scheme is specified by using one of HSV, JET, COOL, and SPRING options.

• genPortrait e.coli.fna.9.asc => e.ecoli.fna.9.asc.bmp .HSV.bmp .JET.bmp ...
• genPortrait e.coli.fna.5.asc => e.ecoli.fna.5.asc.bmp .HSV.bmp .JET.bmp ...

Sequences

631 genome sequences are available for download as an input from here
Or you can download a partial sequence of

[NC_000117.1] Chlamydia trachomatis [NC_000853.1] Thermotoga maritima [NC_000854.2] Aeropyrum pernix [NC_000868.1] Pyrococcus abyssi [NC_000907.1] Haemophilus influenzae [NC_000908.2] Mycoplasma genitalium [NC_000909.1] Methanocaldococcus jannaschii [NC_000912.1] Mycoplasma pneumoniae [NC_000913.2] Escherichia coli [NC_000915.1] Helicobacter pylori [NC_000916.1] Methanothermobacter thermautotrophicus [NC_000917.1] Archaeoglobus fulgidus [NC_000918.1] Aquifex aeolicus [NC_000919.1] Treponema pallidum [NC_000921.1] Helicobacter pylori [NC_000922.1] Chlamydophila pneumoniae [NC_000961.1] Pyrococcus horikoshii [NC_000962.2] Mycobacterium tuberculosis [NC_000963.1] Rickettsia prowazekii [NC_001263.1] Deinococcus radiodurans [NC_001264.1] Deinococcus radiodurans [NC_001318.1] Borrelia burgdorferi [NC_001732.1] Methanocaldococcus jannaschii [NC_002162.1] Ureaplasma parvum [NC_002163.1] Campylobacter jejuni [NC_002179.2] Chlamydophila pneumoniae [NC_002488.3] Xylella fastidiosa [NC_002491.1] Chlamydophila pneumoniae [NC_002505.1] Vibrio cholerae [NC_002506.1] Vibrio cholerae [NC_002528.1] Buchnera aphidicola [NC_002570.2] Bacillus halodurans [NC_002578.1] Thermoplasma acidophilum [NC_002607.1] Halobacterium sp. [NC_002620.2] Chlamydia muridarum [NC_002655.2] Escherichia coli [NC_002662.1] Lactococcus lactis [NC_002677.1] Mycobacterium leprae [NC_002678.2] Mesorhizobium loti [NC_002689.2] Thermoplasma volcanium [NC_002695.1] Escherichia coli [NC_002696.2] Caulobacter crescentus [NC_002745.2] Staphylococcus aureus [NC_002754.1] Sulfolobus solfataricus [NC_002755.2] Mycobacterium tuberculosis [NC_002758.2] Staphylococcus aureus [NC_002771.1] Mycoplasma pulmonis [NC_002927.3] Bordetella bronchiseptica [NC_002928.3] Bordetella parapertussis [NC_002929.2] Bordetella pertussis [NC_002932.3] Chlorobium tepidum [NC_002935.2] Corynebacterium diphtheriae [NC_002936.3] Dehalococcoides ethenogenes [NC_002937.3] Desulfovibrio vulgaris [NC_002939.4] Geobacter sulfurreducens [NC_002940.2] Haemophilus ducreyi [NC_002942.5] Legionella pneumophila [NC_002944.2] Mycobacterium avium [NC_002945.3] Mycobacterium bovis [NC_002946.2] Neisseria gonorrhoeae [NC_002947.3] Pseudomonas putida [NC_002950.2] Porphyromonas gingivalis [NC_002951.2] Staphylococcus aureus [NC_002952.2] Staphylococcus aureus [NC_002953.3] Staphylococcus aureus [NC_002967.9] Treponema denticola [NC_002971.3] Coxiella burnetii [NC_002973.6] Listeria monocytogenes [NC_002976.3] Staphylococcus epidermidis [NC_002977.6] Methylococcus capsulatus [NC_002978.6] Wolbachia endosymbiont [NC_003028.2] Streptococcus pneumoniae [NC_003030.1] Clostridium acetobutylicum [NC_003047.1] Sinorhizobium meliloti [NC_003062.2] Agrobacterium tumefaciens [NC_003063.2] Agrobacterium tumefaciens [NC_003098.1] Streptococcus pneumoniae [NC_003103.1] Rickettsia conorii [NC_003106.2] Sulfolobus tokodaii [NC_003112.2] Neisseria meningitidis [NC_003116.1] Neisseria meningitidis [NC_003143.1] Yersinia pestis [NC_003155.3] Streptomyces avermitilis [NC_003198.1] Salmonella enterica [NC_003210.1] Listeria monocytogenes [NC_003212.1] Listeria innocua [NC_003228.3] Bacteroides fragilis [NC_003295.1] Ralstonia solanacearum [NC_003317.1] Brucella melitensis [NC_003318.1] Brucella melitensis [NC_003361.3] Chlamydophila caviae [NC_003364.1] Pyrobaculum aerophilum [NC_003366.1] Clostridium perfringens [NC_003413.1] Pyrococcus furiosus [NC_003450.3] Corynebacterium glutamicum [NC_003454.1] Fusobacterium nucleatum [NC_003485.1] Streptococcus pyogenes [NC_003551.1] Methanopyrus kandleri [NC_003552.1] Methanosarcina acetivorans [NC_003869.1] Thermoanaerobacter tengcongensis [NC_003888.3] Streptomyces coelicolor [NC_003901.1] Methanosarcina mazei [NC_003902.1] Xanthomonas campestris [NC_003909.8] Bacillus cereus [NC_003910.7] Colwellia psychrerythraea [NC_003911.11] Silicibacter pomeroyi [NC_003912.7] Campylobacter jejuni [NC_003919.1] Xanthomonas axonopodis [NC_003923.1] Staphylococcus aureus [NC_003997.3] Bacillus anthracis [NC_004061.1] Buchnera aphidicola [NC_004070.1] Streptococcus pyogenes [NC_004088.1] Yersinia pestis [NC_004116.1] Streptococcus agalactiae [NC_004129.6] Pseudomonas fluorescens [NC_004193.1] Oceanobacillus iheyensis [NC_004307.2] Bifidobacterium longum [NC_004310.3] Brucella suis [NC_004311.2] Brucella suis [NC_004337.1] Shigella flexneri [NC_004342.1] Leptospira interrogans [NC_004343.1] Leptospira interrogans [NC_004344.2] Wigglesworthia glossinidia [NC_004347.1] Shewanella oneidensis [NC_004350.1] Streptococcus mutans [NC_004368.1] Streptococcus agalactiae [NC_004369.1] Corynebacterium efficiens [NC_004431.1] Escherichia coli [NC_004432.1] Mycoplasma penetrans [NC_004459.2] Vibrio vulnificus [NC_004460.1] Vibrio vulnificus [NC_004461.1] Staphylococcus epidermidis [NC_004463.1] Bradyrhizobium japonicum [NC_004545.1] Buchnera aphidicola [NC_004547.2] Erwinia carotovora [NC_004551.1] Tropheryma whipplei [NC_004552.2] Chlamydophila abortus [NC_004556.1] Xylella fastidiosa [NC_004557.1] Clostridium tetani [NC_004567.1] Lactobacillus plantarum [NC_004572.3] Tropheryma whipplei [NC_004603.1] Vibrio parahaemolyticus [NC_004605.1] Vibrio parahaemolyticus [NC_004606.1] Streptococcus pyogenes [NC_004631.1] Salmonella enterica [NC_004663.1] Bacteroides thetaiotaomicron [NC_004668.1] Enterococcus faecalis [NC_004722.1] Bacillus cereus [NC_004741.1] Shigella flexneri [NC_004757.1] Nitrosomonas europaea [NC_004829.1] Mycoplasma gallisepticum [NC_004842.2] Anaplasma marginale [NC_004917.1] Helicobacter hepaticus [NC_005027.1] Rhodopirellula baltica [NC_005042.1] Prochlorococcus marinus [NC_005043.1] Chlamydophila pneumoniae [NC_005061.1] Candidatus Blochmannia [NC_005070.1] Synechococcus sp. [NC_005071.1] Prochlorococcus marinus [NC_005072.1] Prochlorococcus marinus [NC_005085.1] Chromobacterium violaceum [NC_005090.1] Wolinella succinogenes [NC_005126.1] Photorhabdus luminescens [NC_005139.1] Vibrio vulnificus [NC_005140.1] Vibrio vulnificus [NC_005213.1] Nanoarchaeum equitans [NC_005295.2] Ehrlichia ruminantium [NC_005296.1] Rhodopseudomonas palustris [NC_005303.1] Onion yellows [NC_005362.1] Lactobacillus johnsonii [NC_005363.1] Bdellovibrio bacteriovorus [NC_005364.2] Mycoplasma mycoides [NC_005773.3] Pseudomonas syringae [NC_005810.1] Yersinia pestis [NC_005823.1] Leptospira interrogans [NC_005824.1] Leptospira interrogans [NC_005835.1] Thermus thermophilus [NC_005861.1] Candidatus Protochlamydia [NC_005877.1] Picrophilus torridus [NC_005945.1] Bacillus anthracis [NC_005955.1] Bartonella quintana [NC_005956.1] Bartonella henselae [NC_005957.1] Bacillus thuringiensis [NC_005966.1] Acinetobacter sp. [NC_006055.1] Mesoplasma florum [NC_006085.1] Propionibacterium acnes [NC_006086.1] Streptococcus pyogenes [NC_006087.1] Leifsonia xyli [NC_006138.1] Desulfotalea psychrophila [NC_006142.1] Rickettsia typhi [NC_006155.1] Yersinia pseudotuberculosis [NC_006156.1] Borrelia garinii [NC_006177.1] Symbiobacterium thermophilum [NC_006270.2] Bacillus licheniformis [NC_006274.1] Bacillus cereus [NC_006300.1] Mannheimia succiniciproducens [NC_006322.1] Bacillus licheniformis [NC_006347.1] Bacteroides fragilis [NC_006348.1] Burkholderia mallei [NC_006349.2] Burkholderia mallei [NC_006350.1] Burkholderia pseudomallei [NC_006351.1] Burkholderia pseudomallei [NC_006360.1] Mycoplasma hyopneumoniae [NC_006361.1] Nocardia farcinica [NC_006368.1] Legionella pneumophila [NC_006369.1] Legionella pneumophila [NC_006370.1] Photobacterium profundum [NC_006371.1] Photobacterium profundum [NC_006396.1] Haloarcula marismortui [NC_006397.1] Haloarcula marismortui [NC_006448.1] Streptococcus thermophilus [NC_006449.1] Streptococcus thermophilus [NC_006461.1] Thermus thermophilus [NC_006510.1] Geobacillus kaustophilus [NC_006511.1] Salmonella enterica [NC_006512.1] Idiomarina loihiensis [NC_006513.1] Azoarcus sp. [NC_006526.1] Zymomonas mobilis [NC_006570.1] Francisella tularensis [NC_006582.1] Bacillus clausii [NC_006624.1] Thermococcus kodakarensis [NC_006677.1] Gluconobacter oxydans [NC_006814.3] Lactobacillus acidophilus [NC_006831.1] Ehrlichia ruminantium [NC_006832.1] Ehrlichia ruminantium [NC_006833.1] Wolbachia endosymbiont [NC_006834.1] Xanthomonas oryzae [NC_006840.1] Vibrio fischeri [NC_006841.1] Vibrio fischeri [NC_006905.1] Salmonella enterica [NC_006908.1] Mycoplasma mobile [NC_006932.1] Brucella abortus [NC_006933.1] Brucella abortus [NC_006958.1] Corynebacterium glutamicum [NC_007005.1] Pseudomonas syringae [NC_007086.1] Xanthomonas campestris [NC_007109.1] Rickettsia felis [NC_007146.1] Haemophilus influenzae [NC_007164.1] Corynebacterium jeikeium [NC_007168.1] Staphylococcus haemolyticus [NC_007181.1] Sulfolobus acidocaldarius [NC_007204.1] Psychrobacter arcticus [NC_007205.1] Candidatus Pelagibacter [NC_007292.1] Candidatus Blochmannia [NC_007294.1] Mycoplasma synoviae [NC_007295.1] Mycoplasma hyopneumoniae [NC_007296.1] Streptococcus pyogenes [NC_007297.1] Streptococcus pyogenes [NC_007298.1] Dechloromonas aromatica [NC_007332.1] Mycoplasma hyopneumoniae [NC_007333.1] Thermobifida fusca [NC_007335.1] Prochlorococcus marinus [NC_007347.1] Ralstonia eutropha [NC_007348.1] Ralstonia eutropha [NC_007350.1] Staphylococcus saprophyticus [NC_007354.1] Ehrlichia canis [NC_007355.1] Methanosarcina barkeri [NC_007356.1] Dehalococcoides sp. [NC_007384.1] Shigella sonnei [NC_007404.1] Thiobacillus denitrificans [NC_007406.1] Nitrobacter winogradskyi [NC_007413.1] Anabaena variabilis [NC_007426.1] Natronomonas pharaonis [NC_007429.1] Chlamydia trachomatis [NC_007432.1] Streptococcus agalactiae [NC_007434.1] Burkholderia pseudomallei [NC_007435.1] Burkholderia pseudomallei [NC_007481.1] Pseudoalteromonas haloplanktis [NC_007482.1] Pseudoalteromonas haloplanktis [NC_007484.1] Nitrosococcus oceani [NC_007492.1] Pseudomonas fluorescens [NC_007493.1] Rhodobacter sphaeroides [NC_007494.1] Rhodobacter sphaeroides [NC_007498.2] Pelobacter carbinolicus [NC_007503.1] Carboxydothermus hydrogenoformans [NC_007508.1] Xanthomonas campestris [NC_007509.1] Burkholderia sp. [NC_007510.1] Burkholderia sp. [NC_007511.1] Burkholderia sp. [NC_007512.1] Pelodictyon luteolum [NC_007513.1] Synechococcus sp. [NC_007514.1] Chlorobium chlorochromatii [NC_007516.1] Synechococcus sp. [NC_007517.1] Geobacter metallireducens [NC_007519.1] Desulfovibrio desulfuricans [NC_007520.2] Thiomicrospira crunogena [NC_007530.2] Bacillus anthracis [NC_007575.1] Thiomicrospira denitrificans [NC_007576.1] Lactobacillus sakei [NC_007577.1] Prochlorococcus marinus [NC_007604.1] Synechococcus elongatus [NC_007606.1] Shigella dysenteriae [NC_007613.1] Shigella boydii [NC_007614.1] Nitrosospira multiformis [NC_007618.1] Brucella melitensis [NC_007622.1] Staphylococcus aureus [NC_007624.1] Brucella melitensis [NC_007626.1] Magnetospirillum magneticum [NC_007633.1] Mycoplasma capricolum [NC_007643.1] Rhodospirillum rubrum [NC_007644.1] Moorella thermoacetica [NC_007645.1] Hahella chejuensis [NC_007650.1] Burkholderia thailandensis [NC_007651.1] Burkholderia thailandensis [NC_007677.1] Salinibacter ruber [NC_007681.1] Methanosphaera stadtmanae [NC_007705.1] Xanthomonas oryzae [NC_007712.1] Sodalis glossinidius [NC_007716.1] Aster yellows [NC_007722.1] Erythrobacter litoralis [NC_007759.1] Syntrophus aciditrophicus [NC_007760.1] Anaeromyxobacter dehalogenans [NC_007761.1] Rhizobium etli [NC_007775.1] Synechococcus sp. [NC_007776.1] Synechococcus sp. [NC_007777.1] Frankia sp. [NC_007778.1] Rhodopseudomonas palustris [NC_007793.1] Staphylococcus aureus [NC_007794.1] Novosphingobium aromaticivorans [NC_007795.1] Staphylococcus aureus [NC_007796.1] Methanospirillum hungatei [NC_007797.1] Anaplasma phagocytophilum [NC_007798.1] Neorickettsia sennetsu [NC_007799.1] Ehrlichia chaffeensis [NC_007802.1] Jannaschia sp. [NC_007880.1] Francisella tularensis [NC_007899.1] Chlamydophila felis [NC_007907.1] Desulfitobacterium hafniense [NC_007908.1] Rhodoferax ferrireducens [NC_007912.1] Saccharophagus degradans [NC_007925.1] Rhodopseudomonas palustris [NC_007929.1] Lactobacillus salivarius [NC_007940.1] Rickettsia bellii [NC_007946.1] Escherichia coli [NC_007947.1] Methylobacillus flagellatus [NC_007951.1] Burkholderia xenovorans [NC_007952.1] Burkholderia xenovorans [NC_007953.1] Burkholderia xenovorans [NC_007954.1] Shewanella denitrificans [NC_007955.1] Methanococcoides burtonii [NC_007958.1] Rhodopseudomonas palustris [NC_007963.1] Chromohalobacter salexigens [NC_007964.1] Nitrobacter hamburgensis [NC_007969.1] Psychrobacter cryohalolentis [NC_007973.1] Ralstonia metallidurans [NC_007974.1] Ralstonia metallidurans [NC_007984.1] Baumannia cicadellinicola [NC_008009.1] Acidobacteria bacterium [NC_008011.1] Lawsonia intracellularis [NC_008021.1] Streptococcus pyogenes [NC_008022.1] Streptococcus pyogenes [NC_008023.1] Streptococcus pyogenes [NC_008024.1] Streptococcus pyogenes [NC_008025.1] Deinococcus geothermalis [NC_008027.1] Pseudomonas entomophila [NC_008044.1] Silicibacter sp. [NC_008048.1] Sphingopyxis alaskensis [NC_008054.1] Lactobacillus delbrueckii [NC_008060.1] Burkholderia cenocepacia [NC_008061.1] Burkholderia cenocepacia [NC_008062.1] Burkholderia cenocepacia [NC_008086.1] Helicobacter pylori [NC_008095.1] Myxococcus xanthus [NC_008146.1] Mycobacterium sp. [NC_008148.1] Rubrobacter xylanophilus [NC_008149.1] Yersinia pestis [NC_008150.1] Yersinia pestis [NC_008209.1] Roseobacter denitrificans [NC_008212.1] Haloquadratum walsbyi [NC_008228.1] Pseudoalteromonas atlantica [NC_008229.1] Helicobacter acinonychis [NC_008245.1] Francisella tularensis [NC_008253.1] Escherichia coli [NC_008254.1] Mesorhizobium sp. [NC_008255.1] Cytophaga hutchinsonii [NC_008258.1] Shigella flexneri [NC_008261.1] Clostridium perfringens [NC_008262.1] Clostridium perfringens [NC_008265.1] Clostridium perfringens [NC_008268.1] Rhodococcus sp. [NC_008277.1] Borrelia afzelii [NC_008278.1] Frankia alni [NC_008309.1] Haemophilus somnus [NC_008312.1] Trichodesmium erythraeum [NC_008313.1] Ralstonia eutropha [NC_008314.1] Ralstonia eutropha [NC_008319.1] Synechococcus sp. [NC_008321.1] Shewanella sp. [NC_008322.1] Shewanella sp. [NC_008340.1] Alkalilimnicola ehrlichei [NC_008343.1] Granulibacter bethesdensis [NC_008344.1] Nitrosomonas eutropha [NC_008345.1] Shewanella frigidimarina [NC_008346.1] Syntrophomonas wolfei [NC_008347.1] Maricaulis maris [NC_008358.1] Hyphomonas neptunium [NC_008369.1] Francisella tularensis [NC_008380.1] Rhizobium leguminosarum [NC_008390.1] Burkholderia cepacia [NC_008391.1] Burkholderia cepacia [NC_008392.1] Burkholderia cepacia [NC_008435.1] Rhodopseudomonas palustris [NC_008463.1] Pseudomonas aeruginosa [NC_008497.1] Lactobacillus brevis [NC_008508.1] Leptospira borgpetersenii [NC_008509.1] Leptospira borgpetersenii [NC_008510.1] Leptospira borgpetersenii [NC_008511.1] Leptospira borgpetersenii [NC_008513.1] Buchnera aphidicola [NC_008525.1] Pediococcus pentosaceus [NC_008526.1] Lactobacillus casei [NC_008527.1] Lactococcus lactis [NC_008528.1] Oenococcus oeni [NC_008529.1] Lactobacillus delbrueckii [NC_008530.1] Lactobacillus gasseri [NC_008531.1] Leuconostoc mesenteroides [NC_008532.1] Streptococcus thermophilus [NC_008533.1] Streptococcus pneumoniae [NC_008536.1] Solibacter usitatus [NC_008541.1] Arthrobacter sp. [NC_008542.1] Burkholderia cenocepacia [NC_008543.1] Burkholderia cenocepacia [NC_008544.1] Burkholderia cenocepacia [NC_008553.1] Methanosaeta thermophila [NC_008554.1] Syntrophobacter fumaroxidans [NC_008555.1] Listeria welshimeri [NC_008563.1] Escherichia coli [NC_008571.1] Gramella forsetii [NC_008576.1] Magnetococcus sp. [NC_008577.1] Shewanella sp. [NC_008578.1] Acidothermus cellulolyticus [NC_008593.1] Clostridium novyi [NC_008595.1] Mycobacterium avium [NC_008596.1] Mycobacterium smegmatis [NC_008599.1] Campylobacter fetus [NC_008600.1] Bacillus thuringiensis [NC_008601.1] Francisella tularensis [NC_008609.1] Pelobacter propionicus [NC_008610.1] Candidatus Ruthia [NC_008611.1] Mycobacterium ulcerans [NC_008618.1] Bifidobacterium adolescentis [NC_008639.1] Chlorobium phaeobacteroides [NC_008686.1] Paracoccus denitrificans [NC_008687.1] Paracoccus denitrificans [NC_008698.1] Thermofilum pendens [NC_008699.1] Nocardioides sp. [NC_008700.1] Shewanella amazonensis [NC_008701.1] Pyrobaculum islandicum [NC_008702.1] Azoarcus sp. [NC_008705.1] Mycobacterium sp. [NC_008709.1] Psychromonas ingrahamii [NC_008711.1] Arthrobacter aurescens [NC_008726.1] Mycobacterium vanbaalenii [NC_008740.1] Marinobacter aquaeolei [NC_008750.1] Shewanella sp. [NC_008751.1] Desulfovibrio vulgaris [NC_008752.1] Acidovorax avenae [NC_008767.1] Neisseria meningitidis [NC_008769.1] Mycobacterium bovis [NC_008781.1] Polaromonas naphthalenivorans [NC_008782.1] Acidovorax sp. [NC_008783.1] Bartonella bacilliformis [NC_008784.1] Burkholderia mallei [NC_008785.1] Burkholderia mallei [NC_008786.1] Verminephrobacter eiseniae [NC_008787.1] Campylobacter jejuni [NC_008789.1] Halorhodospira halophila [NC_008800.1] Yersinia enterocolitica [NC_008816.1] Prochlorococcus marinus [NC_008817.1] Prochlorococcus marinus [NC_008818.1] Hyperthermus butylicus [NC_008819.1] Prochlorococcus marinus [NC_008820.1] Prochlorococcus marinus [NC_008825.1] Methylibium petroleiphilum [NC_008835.1] Burkholderia mallei [NC_008836.1] Burkholderia mallei [NC_008942.1] Methanocorpusculum labreanum [NC_009004.1] Lactococcus lactis [NC_009009.1] Streptococcus sanguinis [NC_009012.1] Clostridium thermocellum [NC_009033.1] Staphylothermus marinus [NC_009049.1] Rhodobacter sphaeroides [NC_009050.1] Rhodobacter sphaeroides [NC_009051.1] Methanoculleus marisnigri [NC_009052.1] Shewanella baltica [NC_009053.1] Actinobacillus pleuropneumoniae [NC_009073.1] Pyrobaculum calidifontis [NC_009074.1] Burkholderia pseudomallei [NC_009075.1] Burkholderia pseudomallei [NC_009076.1] Burkholderia pseudomallei [NC_009077.1] Mycobacterium sp. [NC_009078.1] Burkholderia pseudomallei [NC_009079.1] Burkholderia mallei [NC_009080.1] Burkholderia mallei [NC_009085.1] Acinetobacter baumannii [NC_009089.1] Clostridium difficile [NC_009091.1] Prochlorococcus marinus [NC_009092.1] Shewanella loihica [NC_009135.1] Methanococcus maripaludis [NC_009138.1] Herminiimonas arsenicoxydans, [NC_009142.1] Saccharopolyspora erythraea [NC_009253.1] Desulfotomaculum reducens [NC_009254.1] Burkholderia vietnamiensis [NC_009255.1] Burkholderia vietnamiensis [NC_009256.1] Burkholderia vietnamiensis [NC_009257.1] Francisella tularensis [NC_009328.1] Geobacillus thermodenitrificans [NC_009332.1] Streptococcus pyogenes [NC_009337.1] Prosthecochloris vibrioformis [NC_009338.1] Mycobacterium gilvum [NC_009342.1] Corynebacterium glutamicum [NC_009348.1] Aeromonas salmonicida [NC_009376.1] Pyrobaculum arsenaticum [NC_009379.1] Polynucleobacter sp. [NC_009380.1] Salinispora tropica [NC_009381.1] Yersinia pestis [NC_009428.1] Rhodobacter sphaeroides [NC_009434.1] Pseudomonas stutzeri [NC_009436.1] Enterobacter sp. [NC_009437.1] Caldicellulosiruptor saccharolyticus [NC_009438.1] Shewanella putrefaciens [NC_009439.1] Pseudomonas mendocina [NC_009440.1] Metallosphaera sedula [NC_009441.1] Flavobacterium johnsoniae [NC_009442.1] Streptococcus suis [NC_009443.1] Streptococcus suis [NC_009445.1] Bradyrhizobium sp. [NC_009446.1] Dichelobacter nodosus [NC_009454.1] Pelotomaculum thermopropionicum [NC_009455.1] Dehalococcoides sp. [NC_009456.1] Vibrio cholerae [NC_009457.1] Vibrio cholerae [NC_009464.1] Uncultured methanogenic [NC_009465.1] Candidatus Vesicomyosocius [NC_009480.1] Clavibacter michiganensis [NC_009481.1] Synechococcus sp. [NC_009482.1] Synechococcus sp. [NC_009483.1] Geobacter uraniumreducens [NC_009484.1] Acidiphilium cryptum [NC_009485.1] Bradyrhizobium sp. [NC_009486.1] Thermotoga petrophila [NC_009487.1] Staphylococcus aureus [NC_009488.1] Orientia tsutsugamushi [NC_009494.1] Legionella pneumophila [NC_009495.1] Clostridium botulinum [NC_009497.1] Mycoplasma agalactiae [NC_009504.1] Brucella ovis [NC_009505.1] Brucella ovis [NC_009511.1] Sphingomonas wittichii [NC_009512.1] Pseudomonas putida [NC_009513.1] Lactobacillus reuteri [NC_009515.1] Methanobrevibacter smithii [NC_009523.1] Roseiflexus sp. [NC_009524.1] Psychrobacter sp. [NC_009525.1] Mycobacterium tuberculosis [NC_009565.1] Mycobacterium tuberculosis [NC_009566.1] Haemophilus influenzae [NC_009567.1] Haemophilus influenzae [NC_009613.1] Flavobacterium psychrophilum [NC_009614.1] Bacteroides vulgatus [NC_009615.1] Parabacteroides distasonis [NC_009616.1] Thermosipho melanesiensis [NC_009617.1] Clostridium beijerinckii [NC_009632.1] Staphylococcus aureus [NC_009633.1] Alkaliphilus metalliredigens [NC_009634.1] Methanococcus vannielii [NC_009635.1] Methanococcus aeolicus [NC_009637.1] Methanococcus maripaludis [NC_009641.1] Staphylococcus aureus [NC_009648.1] Klebsiella pneumoniae [NC_009654.1] Marinomonas sp. [NC_009655.1] Actinobacillus succinogenes [NC_009656.1] Pseudomonas aeruginosa [NC_009659.1] Janthinobacterium sp. [NC_009662.1] Nitratiruptor sp. [NC_009663.1] Sulfurovum sp. [NC_009664.1] Kineococcus radiotolerans [NC_009667.1] Ochrobactrum anthropi [NC_009668.1] Ochrobactrum anthropi [NC_009674.1] Bacillus cereus [NC_009675.1] Anaeromyxobacter sp. [NC_009697.1] Clostridium botulinum [NC_009698.1] Clostridium botulinum [NC_009699.1] Clostridium botulinum [NC_009706.1] Clostridium kluyveri [NC_009708.1] Yersinia pseudotuberculosis [NC_009712.1] Candidatus Methanoregula [NC_009714.1] Campylobacter hominis [NC_009715.1] Campylobacter curvus [NC_009718.1] Fervidobacterium nodosum [NC_009719.1] Parvibaculum lavamentivorans [NC_009725.1] Bacillus amyloliquefaciens [NC_009727.1] Coxiella burnetii [NC_009749.1] Francisella tularensis [NC_009767.1] Roseiflexus castenholzii [NC_009776.1] Ignicoccus hospitalis [NC_009778.1] Enterobacter sakazakii [NC_009782.1] Staphylococcus aureus [NC_009785.1] Streptococcus gordonii [NC_009792.1] Citrobacter koseri [NC_009800.1] Escherichia coli [NC_009801.1] Escherichia coli [NC_009802.1] Campylobacter concisus [NC_009828.1] Thermotoga lettingae [NC_009831.1] Shewanella sediminis [NC_009832.1] Serratia proteamaculans [NC_009839.1] Campylobacter jejuni [NC_009840.1] Prochlorococcus marinus [NC_009848.1] Bacillus pumilus [NC_009850.1] Arcobacter butzleri [NC_009879.1] Rickettsia canadensis [NC_009881.1] Rickettsia akari [NC_009882.1] Rickettsia rickettsii [NC_009883.1] Rickettsia bellii [NC_009900.1] Rickettsia massiliae [NC_009901.1] Shewanella pealeana [NC_009921.1] Frankia sp. [NC_009922.1] Alkaliphilus oremlandii [NC_009925.1] Acaryochloris marina [NC_009937.1] Azorhizobium caulinodans [NC_009943.1] Candidatus Desulfococcus [NC_009952.1] Dinoroseobacter shibae [NC_009953.1] Salinispora arenicola [NC_009954.1] Caldivirga maquilingensis [NC_009972.1] Herpetosiphon aurantiacus [NC_009975.1] Methanococcus maripaludis [NC_009976.1] Prochlorococcus marinus [NC_009997.1] Shewanella baltica [NC_010001.1] Clostridium phytofermentans [NC_010002.1] Delftia acidovorans [NC_010003.1] Petrotoga mobilis
from to

Example output files

The asc files generated for the 631 genome sequences using different size of oligonucleotides are available from here

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Kihara Lab | Purdue University