Protein fluctuation prediction using SVR

FlexPred takes a protein structure in PDB format as input, and predict the fluctuation of each residue (Cα atom) by considering B-factor and Cα atom contacts number with set of cutoffs (16, 15, 18, 12, 8, 6, 20, 22 [Angstrom]) of the protein with the Support Vector Regression. As output program create text file with data and png image with fluctuation plot (and DSSP sec. str. assignment).

For details, please read our paper M Jamroz, A Kolinski & D Kihara "Structural features of proteins that predict real-value fluctuation of globular proteins"

Select PDB model
(select models with backbone atoms. Only one chain in pdb file.)
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Download software Please read README file before use. download file