PI-LZerD: Protein Docking Prediction Using Predicted Protein-Protein Interface

About PI-LZerD

PI-LZerD use protein interfaces predictions from current protein interface prediction methods with LZerD program, a geometry-hashing based local pair-wise protein docking prediction method, iteratively to reach higher prediction accuracies. The algorithm is here, please cite: Protein docking prediction using predicted Protein-Protein Interface, Bin Li, Daisuke Kihara, submitted in 2011

Resource

The 124 PDB files of bound and unbound. The residue indics of correct, 5 residues shift, 10 residues shift, 12 residues shift, 15 residues shift for bounded cases. The PDB files of using meta-PPISP with the predictions.

Copyright

Copyright of this distribution belongs to Bin Li, Daisuke Kihara. It's free for academic non-profit institutions. For commercial entities or government research labs, please contact us (dkihara@purdue.edu) to get the approval to use this distribution. Redistribution of any files in this pack without our allowance is prohibited.

Download PI-LZerD

The binary executable files of PI-LZerD are available and can be downloaded here. Installation instructions are given in the README file provided.

FEEDBACK

If you have any questions or suggestions, please feel free to contact us (dkihara@purdue.edu). This package will be updated based on the user feedback.